How to use WDSP predictor

2020-03-01 188浏览

  • 1.How to use WDSP predictor? WDSPdbhttp://www.wdspdb.com/wdsp/1
  • 2.The WDSP predictor The The job job name name Iterative Iterative rounds rounds for for running running the the predictor predictor BLAST BLAST searching searching database database Entrance Entrance of of WDSP WDSP predictor predictor in in navigation navigation bar bar Email Email address address to to receive receive prediction prediction result result Usage Usage of of the the WDSP WDSP predictor predictor Inputting Inputting sequences sequences for for predicting predicting Submit Submit button button 2
  • 3.The pipeline of using WDSP predictor 1. 1. Input Input the the job job name. name. The The name name should should be be composed composed by by character, character, digit, digit, underline, underline, vertical vertical bar, bar, dot, dot, and and square square brackets brackets and and its its length<=20. length<=20. 2. 2. Leave Leave an an email email address address for for receiving receiving the the prediction prediction results. results. The The server server will will check check ifif you you have have entered entered aa valid valid address. address. 3. 3. Choose Choose the the iterative iterative rounds rounds of of WDSP WDSP running running for for each each sequence. sequence. And And the the predictor predictor will will output output the the best best result. result. 4. 4. Select Select the the sequence sequence database database for for running running BLAST BLAST 5. 5. Input Input the the protein protein sequences sequences in in standard standard FASTA FASTA format. format. The The unnatural unnatural amino amino acids acids are are not not allowed. allowed. The The maximum maximum input input is is 55 sequences sequences and and the the length length must must be be >= >= 40 40 residues. residues. 6. 6. Click Click the the button button “SUBMIT” “SUBMIT” to to submit submit the the job job 3
  • 4.The link to the job result After the job submitted, the predictor will jump to the page including the result information The The job job name name submitted submitted The The link link to to the the result result page page example@test.c om The The email email address address for for receiving receiving to to the the link link of of prediction prediction result result 4
  • 5.The link to the job result • The WDSP predictor will take some time to run the job • Before the job complete, the result page will show as following 5
  • 6.The predicted result When the job is complete, the result page will present as following The The job job name name submitted submitted The The sequence sequence identifier identifier WDSP WDSP prediction prediction result resultNote:The interpretation of the prediction result refers to the guide of “Protein detail page” and the Help page. 6
  • 7.The email from WDSP predictor • When your task is complete, the WDSP predictor also send an email to the address you inputted • The contents of the email are as follows The The sequence sequence identifier identifier The The job job name name submitted submitted The The link link to to result result page. page. •• •• >> “kiYSWy” “kiYSWy” is is the the unique unique ID ID generated generated by by WDSP WDSP predictor predictor for for each each job. job. The The result result link link composed composed as asfollow:'>follow: