def frame_to_state_mapping2(shift_file, state_lab_file, fs, states_per_phone=5, b_refine=True):
#Read files:
v_shift = lu.read_binfile(shift_file, dim=1)
v_pm = la.shift_to_pm(v_shift)
m_state_times = np.loadtxt(state_lab_file, usecols=(0,1))
# to miliseconds:
v_pm_ms = 1000 * v_pm / fs
m_state_times_ms = m_state_times / 10000.0
# Compare:
nfrms = len(v_pm_ms)
v_st = np.zeros(nfrms) - 1 # init
for f in xrange(nfrms):
vb_greater = (v_pm_ms[f] >= m_state_times_ms[:,0]) # * (v_pm_ms[f] < m_state_times_ms[:,1])
state_nx = np.where(vb_greater)[0][-1]
v_st[f] = np.remainder(state_nx, states_per_phone)
# Refining:
if b_refine:
state_len_ms = m_state_times_ms[state_nx,1] - m_state_times_ms[state_nx,0]
fine_pos = ( v_pm_ms[f] - m_state_times_ms[state_nx,0] ) / state_len_ms
v_st[f] += fine_pos
# Protection against wrong ended label files:
np.clip(v_st, 0, states_per_phone, out=v_st)
return v_st
#==============================================================================
python类remainder()的实例源码
def mand2pixmap(self,width:int,height:int, mand, maxiter:int, pixmap, progress, e):
pen=[]
pen.append(qRgb(0,0,0))
maxcol=len(colormap)
for i in range(maxcol):
(r,g,b)=colormap[(i+self.coffset)%maxcol]
pen.append(qRgb(r,g,b))
z = np.full((width, height),maxcol, dtype=int)
mand2 = np.remainder(mand, z)
mand2[mand==0]=-1
mand2 = np.add(mand2, np.ones((width, height), int))
st=100/height
im=QImage(height, width, QImage.Format_RGB888)
for j in range(0,height-1,5):
for i in range(width):
im.setPixel(height-j-1,width-i-1,pen[mand2[i,j]])
im.setPixel(height-j-2,width-i-1,pen[mand2[i,j+1]])
im.setPixel(height-j-3,width-i-1,pen[mand2[i,j+2]])
im.setPixel(height-j-4,width-i-1,pen[mand2[i,j+3]])
im.setPixel(height-j-5,width-i-1,pen[mand2[i,j+4]])
progress.setValue(st*j)
e.processEvents()
p = QPainter()
p.begin(pixmap)
p.drawImage(QPoint(0,0),im)
self.bild.update()
def test_float_remainder_corner_cases(self):
# Check remainder magnitude.
for dt in np.typecodes['Float']:
b = np.array(1.0, dtype=dt)
a = np.nextafter(np.array(0.0, dtype=dt), -b)
rem = np.remainder(a, b)
assert_(rem <= b, 'dt: %s' % dt)
rem = np.remainder(-a, -b)
assert_(rem >= -b, 'dt: %s' % dt)
# Check nans, inf
with warnings.catch_warnings():
warnings.simplefilter('always')
warnings.simplefilter('ignore', RuntimeWarning)
for dt in np.typecodes['Float']:
fone = np.array(1.0, dtype=dt)
fzer = np.array(0.0, dtype=dt)
finf = np.array(np.inf, dtype=dt)
fnan = np.array(np.nan, dtype=dt)
rem = np.remainder(fone, fzer)
assert_(np.isnan(rem), 'dt: %s, rem: %s' % (dt, rem))
# MSVC 2008 returns NaN here, so disable the check.
#rem = np.remainder(fone, finf)
#assert_(rem == fone, 'dt: %s, rem: %s' % (dt, rem))
rem = np.remainder(fone, fnan)
assert_(np.isnan(rem), 'dt: %s, rem: %s' % (dt, rem))
rem = np.remainder(finf, fone)
assert_(np.isnan(rem), 'dt: %s, rem: %s' % (dt, rem))
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def ang2pix_ring_single(nside, theta, phi):
"""Calculate the pixel indexes in RING ordering scheme for one single
pair of angular coordinate on the sphere.
Parameters
----------
theta : float
The polar angle (i.e., latitude), ? ? [0, ?]. (unit: rad)
phi : float
The azimuthal angle (i.e., longitude), ? ? [0, 2?). (unit: rad)
Returns
-------
ipix : int
The index of the pixel corresponding to the input coordinate.
NOTE
----
* Only support the *RING* ordering scheme
* This is the JIT-optimized version that partially replaces the
``healpy.ang2pix``
References
----------
- HEALPix software: ``src/C/subs/chealpix.c``: ``ang2pix_ring_z_phi()``
http://healpix.sourceforge.net/
"""
z = np.cos(theta) # colatitude
za = np.absolute(z)
tt = (2.0 / np.pi) * np.remainder(phi, 2*np.pi) # range: [0, 4)
if za <= 2.0/3.0:
# Equatorial region
temp1 = nside * (tt + 0.5)
temp2 = nside * z * 0.75
jp = int(temp1 - temp2) # Index of ascending edge line
jm = int(temp1 + temp2) # Index of descending edge line
# Ring number counted from z=2/3
iring = nside + 1 + jp - jm # range: [1, 2n+1]
kshift = 1 - (iring & 1) # kshift=1 if ir even, 0 otherwise
ip = int((jp + jm - nside + kshift + 1) / 2)
ip = np.remainder(ip, 4*nside)
ipix = nside * (nside-1) * 2 + (iring-1) * 4 * nside + ip
else:
# North & South polar caps
tp = tt - int(tt)
tmp = nside * np.sqrt(3 * (1-za))
jp = int(tp * tmp)
jm = int((1.0-tp) * tmp)
# Ring number counted from the closest pole
iring = jp + jm + 1
ip = int(tt * iring)
ip = np.remainder(ip, 4*iring)
#
if z > 0:
ipix = 2 * iring * (iring-1) + ip
else:
ipix = 12 * nside * nside - 2 * iring * (iring+1) + ip
#
return ipix
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def compute(self, X=[]):
if len(X)==0:
X=self.data
else:
pass
originalLength=X.shape[0]
originalWidth=self.weightsOpenCL.shape[0]
if not self.openCL.active:
raise Exception('openCL not active')
#===================================================================
# networks=self.weights.wHL.shape[0]
# phiOL=np.empty((X.shape[0], networks))
# for i0 in range(networks):
# aHL=X.dot(self.weights.wHL[i0,:,:])+np.tile(self.weights.bHL[i0,],(X.shape[0],1))
# phiHL=self._activate(aHL,0)
# aOL=phiHL.dot(self.weights.wOL[:,i0])+self.weights.bOL[i0,]
# phiOL[:,i0]=self._activate(aOL,1)
#===================================================================
else:
remData=np.remainder(X.shape[0],self.openCL.workGroup[0])
if remData != 0:
X=np.vstack((X, np.zeros((self.openCL.workGroup[0]-remData, X.shape[1]))))
else:
remData=self.openCL.workGroup[0]
remNetwork=np.remainder(self.weightsOpenCL.shape[0],self.openCL.workGroup[1])
if remNetwork != 0:
weights=np.vstack((self.weightsOpenCL, np.zeros((self.openCL.workGroup[1]-remNetwork, self.weightsOpenCL.shape[1]))))
else:
weights=self.weightsOpenCL
remNetwork=self.openCL.workGroup[1]
XOpenCL=X.reshape(-1, order = 'C').astype(np.float32)
weightsOpenCL=weights.reshape(-1, order = 'C').astype(np.float32)
mf = cl.mem_flags
inputs=np.int32(X.shape[1])
nodes=np.int32(self.nodes)
dataSize=np.int32(X.shape[0])
weightSize=np.int32(self.weightsOpenCL.shape[1])
dataBuffer = cl.Buffer(self.openCL.ctx, mf.READ_ONLY | mf.COPY_HOST_PTR, hostbuf=XOpenCL)
weightsBuffer = cl.Buffer(self.openCL.ctx, mf.READ_ONLY | mf.COPY_HOST_PTR, hostbuf=weightsOpenCL)
outBuffer = cl.Buffer(self.openCL.ctx, mf.WRITE_ONLY, int(XOpenCL.nbytes/inputs*weights.shape[0]))
kernel=self.openCL.prg.ann
globalSize=(int(X.shape[0]), int(weights.shape[0]))
localSize=(int(self.openCL.workGroup[0]), int(self.openCL.workGroup[1]))
kernel(self.openCL.queue, globalSize, localSize, inputs, nodes, dataSize, weightSize, dataBuffer, outBuffer, weightsBuffer, cl.LocalMemory(self.weightsOpenCL[0,].nbytes*localSize[1]))
phiOL = np.empty((np.prod(globalSize),)).astype(np.float32)
cl.enqueue_copy(self.openCL.queue, phiOL, outBuffer)
phiOL=np.reshape(phiOL, globalSize, order='F')[:originalLength,:originalWidth]
if self.lowerThreshold!=-999:
phiOL[phiOL<self.lowerThreshold] = self.lowerThreshold
return phiOL
test_half.py 文件源码
项目：PyDataLondon29-EmbarrassinglyParallelDAWithAWSLambda
作者: SignalMedia
项目源码
文件源码
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def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
def pbc_wrap_coords(coords_frac, copy=True, mask=[True]*3, xyz_axis=-1):
"""Apply periodic boundary conditions to array of fractional coords.
Wrap atoms with fractional coords > 1 or < 0 into the cell.
Parameters
----------
coords_frac : array 2d or 3d
fractional coords, if 3d then one axis is assumed to be a time axis and
the array is a MD trajectory or such
copy : bool
Copy coords_frac before applying pbc.
mask : sequence of bools, len = 3 for x,y,z
Apply pbc only x, y or z. E.g. [True, True, False] would not wrap the z
coordinate.
xyz_axis : the axis of `coords_frac` where the indices 0,1,2 pull out the x,y,z
coords. For a usual 2d array of coords with shape (natoms,3),
xyz_axis=1 (= last axis = -1). For a 3d array (natoms, nstep, 3),
xyz_axis=2 (also -1).
Returns
-------
coords_frac : array_like(coords_frac)
Array with all values in [0,1] except for those where ``mask[i]=False``.
Notes
-----
About the copy arg: If ``copy=False``, then this is an in-place operation
and the array in the global scope is modified! In fact, then these do the
same::
>>> a = pbc_wrap_coords(a, copy=False)
>>> pbc_wrap_coords(a, copy=False)
"""
assert coords_frac.shape[xyz_axis] == 3, "dim of xyz_axis of `coords_frac` must be == 3"
ndim = coords_frac.ndim
assert ndim in [2,3], "coords_frac must be 2d or 3d array"
tmp = coords_frac.copy() if copy else coords_frac
for i in range(3):
if mask[i]:
sl = [slice(None)]*ndim
sl[xyz_axis] = i
tmp[sl] = np.remainder(tmp[sl], 1.0)
return tmp
def test_half_ufuncs(self):
"""Test the various ufuncs"""
a = np.array([0, 1, 2, 4, 2], dtype=float16)
b = np.array([-2, 5, 1, 4, 3], dtype=float16)
c = np.array([0, -1, -np.inf, np.nan, 6], dtype=float16)
assert_equal(np.add(a, b), [-2, 6, 3, 8, 5])
assert_equal(np.subtract(a, b), [2, -4, 1, 0, -1])
assert_equal(np.multiply(a, b), [0, 5, 2, 16, 6])
assert_equal(np.divide(a, b), [0, 0.199951171875, 2, 1, 0.66650390625])
assert_equal(np.equal(a, b), [False, False, False, True, False])
assert_equal(np.not_equal(a, b), [True, True, True, False, True])
assert_equal(np.less(a, b), [False, True, False, False, True])
assert_equal(np.less_equal(a, b), [False, True, False, True, True])
assert_equal(np.greater(a, b), [True, False, True, False, False])
assert_equal(np.greater_equal(a, b), [True, False, True, True, False])
assert_equal(np.logical_and(a, b), [False, True, True, True, True])
assert_equal(np.logical_or(a, b), [True, True, True, True, True])
assert_equal(np.logical_xor(a, b), [True, False, False, False, False])
assert_equal(np.logical_not(a), [True, False, False, False, False])
assert_equal(np.isnan(c), [False, False, False, True, False])
assert_equal(np.isinf(c), [False, False, True, False, False])
assert_equal(np.isfinite(c), [True, True, False, False, True])
assert_equal(np.signbit(b), [True, False, False, False, False])
assert_equal(np.copysign(b, a), [2, 5, 1, 4, 3])
assert_equal(np.maximum(a, b), [0, 5, 2, 4, 3])
x = np.maximum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [0, 5, 1, 0, 6])
assert_equal(np.minimum(a, b), [-2, 1, 1, 4, 2])
x = np.minimum(b, c)
assert_(np.isnan(x[3]))
x[3] = 0
assert_equal(x, [-2, -1, -np.inf, 0, 3])
assert_equal(np.fmax(a, b), [0, 5, 2, 4, 3])
assert_equal(np.fmax(b, c), [0, 5, 1, 4, 6])
assert_equal(np.fmin(a, b), [-2, 1, 1, 4, 2])
assert_equal(np.fmin(b, c), [-2, -1, -np.inf, 4, 3])
assert_equal(np.floor_divide(a, b), [0, 0, 2, 1, 0])
assert_equal(np.remainder(a, b), [0, 1, 0, 0, 2])
assert_equal(np.square(b), [4, 25, 1, 16, 9])
assert_equal(np.reciprocal(b), [-0.5, 0.199951171875, 1, 0.25, 0.333251953125])
assert_equal(np.ones_like(b), [1, 1, 1, 1, 1])
assert_equal(np.conjugate(b), b)
assert_equal(np.absolute(b), [2, 5, 1, 4, 3])
assert_equal(np.negative(b), [2, -5, -1, -4, -3])
assert_equal(np.sign(b), [-1, 1, 1, 1, 1])
assert_equal(np.modf(b), ([0, 0, 0, 0, 0], b))
assert_equal(np.frexp(b), ([-0.5, 0.625, 0.5, 0.5, 0.75], [2, 3, 1, 3, 2]))
assert_equal(np.ldexp(b, [0, 1, 2, 4, 2]), [-2, 10, 4, 64, 12])
