def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
python类eig()的实例源码
def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def get_dimensions(self):
# Calculate within class scatter
Sw = np.sum(self._scatter_matrix_by_class.values(),
axis=0)
# Calculate between class scatter
s = (self._p, self._p)
Sb = np.zeros(s)
for k in self._classes:
a = self._mean_vector_by_class[k] - self._global_mean_vector
Sb += self._N_by_class[k] * a.dot(a.T)
# Compute eigenvectors
Sw_inv = inv(Sw)
A = Sw_inv.dot(Sb)
eigen_values, eigen_vectors = eig(A)
idx = np.argsort(eigen_values)
eigen_vectors = eigen_vectors[idx][::-1]
return eigen_vectors
def getPrincipalAxes(self):
X = self.VPos - self.getCentroid()
XTX = (X.T).dot(X)
(lambdas, axes) = linalg.eig(XTX)
#Put the eigenvalues in decreasing order
idx = lambdas.argsort()[::-1]
lambdas = lambdas[idx]
axes = axes[:, idx]
T = X.dot(axes)
maxProj = T.max(0)
minProj = T.min(0)
axes = axes.T #Put each axis on each row to be consistent with everything else
return (axes, maxProj, minProj)
#Delete the parts of the mesh below "plane". If fillHoles
#is true, plug up the holes that result from the cut
test_regression.py 文件源码
项目：PyDataLondon29-EmbarrassinglyParallelDAWithAWSLambda
作者: SignalMedia
项目源码
文件源码
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def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def __compute_lanczos(self, H, G):
"""Compute change-point score using the Lanczos method.
"""
# assuming m = w
self.q, _, _ = power1(G, self.q, n_iter=1)
k = 2 * self.r if self.r % 2 == 0 else 2 * self.r - 1
T = lanczos(np.dot(H, H.T), self.q, k)
# find eigenvectors and eigenvalues of T
# eigvals, eigvecs = ln.eig(T)
eigvals, eigvecs = tridiag_eig(T, n_iter=1)
# `eig()` returns unordered eigenvalues,
# so the top-r eigenvectors should be picked carefully
return 1 - np.sqrt(np.sum(eigvecs[0, np.argsort(eigvals)[::-1][:self.r]] ** 2))
def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def getPrincipalAxes(self):
X = self.VPos - self.getCentroid()
XTX = (X.T).dot(X)
(lambdas, axes) = linalg.eig(XTX)
#Put the eigenvalues in decreasing order
idx = lambdas.argsort()[::-1]
lambdas = lambdas[idx]
axes = axes[:, idx]
T = X.dot(axes)
maxProj = T.max(0)
minProj = T.min(0)
axes = axes.T #Put each axis on each row to be consistent with everything else
return (axes, maxProj, minProj)
#Delete the parts of the mesh below "plane". If fillHoles
#is true, plug up the holes that result from the cut
def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def __compute_lanczos(self, H, G):
"""Compute change-point score using the Lanczos method.
"""
# assuming m = w
self.q, _, _ = power1(G, self.q, n_iter=1)
k = 2 * self.r if self.r % 2 == 0 else 2 * self.r - 1
T = lanczos(np.dot(H, H.T), self.q, k)
# find eigenvectors and eigenvalues of T
# eigvals, eigvecs = ln.eig(T)
eigvals, eigvecs = tridiag_eig(T, n_iter=1)
# `eig()` returns unordered eigenvalues,
# so the top-r eigenvectors should be picked carefully
return 1 - np.sqrt(np.sum(eigvecs[0, np.argsort(eigvals)[::-1][:self.r]] ** 2))
def test_eig_build(self, level=rlevel):
# Ticket #652
rva = array([1.03221168e+02 + 0.j,
-1.91843603e+01 + 0.j,
-6.04004526e-01 + 15.84422474j,
-6.04004526e-01 - 15.84422474j,
-1.13692929e+01 + 0.j,
-6.57612485e-01 + 10.41755503j,
-6.57612485e-01 - 10.41755503j,
1.82126812e+01 + 0.j,
1.06011014e+01 + 0.j,
7.80732773e+00 + 0.j,
-7.65390898e-01 + 0.j,
1.51971555e-15 + 0.j,
-1.51308713e-15 + 0.j])
a = arange(13 * 13, dtype=float64)
a.shape = (13, 13)
a = a % 17
va, ve = linalg.eig(a)
va.sort()
rva.sort()
assert_array_almost_equal(va, rva)
def solve_spectral(prob, *args, **kwargs):
"""Solve the spectral relaxation with lambda = 1.
"""
# TODO: do this efficiently without SDP lifting
# lifted variables and semidefinite constraint
X = cvx.Semidef(prob.n + 1)
W = prob.f0.homogeneous_form()
rel_obj = cvx.Minimize(cvx.sum_entries(cvx.mul_elemwise(W, X)))
W1 = sum([f.homogeneous_form() for f in prob.fs if f.relop == '<='])
W2 = sum([f.homogeneous_form() for f in prob.fs if f.relop == '=='])
rel_prob = cvx.Problem(
rel_obj,
[
cvx.sum_entries(cvx.mul_elemwise(W1, X)) <= 0,
cvx.sum_entries(cvx.mul_elemwise(W2, X)) == 0,
X[-1, -1] == 1
]
)
rel_prob.solve(*args, **kwargs)
if rel_prob.status not in [cvx.OPTIMAL, cvx.OPTIMAL_INACCURATE]:
raise Exception("Relaxation problem status: %s" % rel_prob.status)
(w, v) = LA.eig(X.value)
return np.sqrt(np.max(w))*np.asarray(v[:-1, np.argmax(w)]).flatten(), rel_prob.value
def fit_ellipse(x,y):
x = x[:,NP.newaxis]
y = y[:,NP.newaxis]
D = NP.hstack((x*x, x*y, y*y, x, y, NP.ones_like(x)))
S = NP.dot(D.T,D)
C = NP.zeros([6,6])
C[0,2] = C[2,0] = 2; C[1,1] = -1
E, V = eig(NP.dot(inv(S), C))
n = NP.argmax(NP.abs(E))
a = V[:,n]
return a
def train_bbox_regressor(X, bbox, gt):
config = Data()
config.min_overlap = 0.6
config.delta = 1000
config.method = 'ridge_reg_chol'
# get training groundtruth
Y, O = get_examples(bbox, gt)
X = X[O>config.min_overlap]
Y = Y[O>config.min_overlap]
# add bias
X = np.c_[X, np.ones([X.shape[0], 1])]
# center and decorrelate targets
mu = np.mean(Y, axis=0).reshape(1, -1)
Y = Y - mu
S = dot(Y.T, Y) / Y.shape[0]
D, V = eig(S)
T = dot(dot(V, diag(1.0/sqrt(D+0.001))), V.T)
T_inv = dot(dot(V, diag(sqrt(D+0.001))), V.T)
Y = dot(Y, T)
model = Data()
model.mu = mu
model.T = T
model.T_inv = T_inv
model.Beta = np.c_[solve(X, Y[:, 0], config.delta, config.method),
solve(X, Y[:, 1], config.delta, config.method),
solve(X, Y[:, 2], config.delta, config.method),
solve(X, Y[:, 3], config.delta, config.method)]
# pack
bbox_reg = Data()
bbox_reg.model = model
bbox_reg.config = config
return bbox_reg
def do(self, a, b):
ev = linalg.eigvals(a)
evalues, evectors = linalg.eig(a)
assert_almost_equal(ev, evalues)
def do(self, a, b):
evalues, evectors = linalg.eig(a)
assert_allclose(dot_generalized(a, evectors),
np.asarray(evectors) * np.asarray(evalues)[..., None, :],
rtol=get_rtol(evalues.dtype))
assert_(imply(isinstance(a, matrix), isinstance(evectors, matrix)))
def test_types(self):
def check(dtype):
x = np.array([[1, 0.5], [0.5, 1]], dtype=dtype)
w, v = np.linalg.eig(x)
assert_equal(w.dtype, dtype)
assert_equal(v.dtype, dtype)
x = np.array([[1, 0.5], [-1, 1]], dtype=dtype)
w, v = np.linalg.eig(x)
assert_equal(w.dtype, get_complex_dtype(dtype))
assert_equal(v.dtype, get_complex_dtype(dtype))
for dtype in [single, double, csingle, cdouble]:
yield check, dtype
def do(self, a, b):
# note that eigenvalue arrays returned by eig must be sorted since
# their order isn't guaranteed.
ev = linalg.eigvalsh(a, 'L')
evalues, evectors = linalg.eig(a)
evalues.sort(axis=-1)
assert_allclose(ev, evalues, rtol=get_rtol(ev.dtype))
ev2 = linalg.eigvalsh(a, 'U')
assert_allclose(ev2, evalues, rtol=get_rtol(ev.dtype))
def fitEllipse(x,y):
x = x[:,np.newaxis]
y = y[:,np.newaxis]
D = np.hstack((x*x, x*y, y*y, x, y, np.ones_like(x)))
S = np.dot(D.T,D)
C = np.zeros([6,6])
C[0,2] = C[2,0] = 2; C[1,1] = -1
E, V = eig(np.dot(inv(S), C))
n = np.argmax(np.abs(E))
a = V[:,n]
return a
def steady_state(P):
"""
Calculates the steady state probability vector for a regular Markov
transition matrix P
Parameters
----------
P : matrix (kxk)
an ergodic Markov transition probability matrix
Returns
-------
implicit : matrix (kx1)
steady state distribution
Examples
--------
Taken from Kemeny and Snell. [1]_ Land of Oz example where the states are
Rain, Nice and Snow - so there is 25 percent chance that if it
rained in Oz today, it will snow tomorrow, while if it snowed today in
Oz there is a 50 percent chance of snow again tomorrow and a 25
percent chance of a nice day (nice, like when the witch with the monkeys
is melting).
>>> import numpy as np
>>> p=np.matrix([[.5, .25, .25],[.5,0,.5],[.25,.25,.5]])
>>> steady_state(p)
matrix([[ 0.4],
[ 0.2],
[ 0.4]])
Thus, the long run distribution for Oz is to have 40 percent of the
days classified as Rain, 20 percent as Nice, and 40 percent as Snow
(states are mutually exclusive).
"""
v,d=la.eig(np.transpose(P))
# for a regular P maximum eigenvalue will be 1
mv=max(v)
# find its position
i=v.tolist().index(mv)
# normalize eigenvector corresponding to the eigenvalue 1
return d[:,i]/sum(d[:,i])
def do(self, a, b):
ev = linalg.eigvals(a)
evalues, evectors = linalg.eig(a)
assert_almost_equal(ev, evalues)
def do(self, a, b):
evalues, evectors = linalg.eig(a)
assert_allclose(dot_generalized(a, evectors),
np.asarray(evectors) * np.asarray(evalues)[..., None, :],
rtol=get_rtol(evalues.dtype))
assert_(imply(isinstance(a, matrix), isinstance(evectors, matrix)))
def test_types(self):
def check(dtype):
x = np.array([[1, 0.5], [0.5, 1]], dtype=dtype)
w, v = np.linalg.eig(x)
assert_equal(w.dtype, dtype)
assert_equal(v.dtype, dtype)
x = np.array([[1, 0.5], [-1, 1]], dtype=dtype)
w, v = np.linalg.eig(x)
assert_equal(w.dtype, get_complex_dtype(dtype))
assert_equal(v.dtype, get_complex_dtype(dtype))
for dtype in [single, double, csingle, cdouble]:
yield check, dtype
def do(self, a, b):
# note that eigenvalue arrays returned by eig must be sorted since
# their order isn't guaranteed.
ev = linalg.eigvalsh(a, 'L')
evalues, evectors = linalg.eig(a)
evalues.sort(axis=-1)
assert_allclose(ev, evalues, rtol=get_rtol(ev.dtype))
ev2 = linalg.eigvalsh(a, 'U')
assert_allclose(ev2, evalues, rtol=get_rtol(ev.dtype))
def normalize_spectral_radius(M, g):
"""reservoirs.normalize_spectral_radius
Normalize the spectral radius of a given matrix M to scale to g
"""
# logger.debug('normalize_spectral_radius: M = %s, g = %s', M, g)
# eig_success = False
# eig_cnt = 0
# compute eigenvalues
# while not eig_success and eig_cnt < 100:
try:
[w,v] = LA.eig(M)
eig_success = True
except LA.linalg.LinAlgError as e:
# logger.error('normalize_spectral_radius LA.eig(M) failed for N = %d with e = %s', M.shape[0], e)
# eig_cnt += 1
pass
# get maximum absolute eigenvalue
lae = np.max(np.abs(w))
# if lae < 1e-3:
# lae = 1
assert lae > 1e-3, "Largest eigenvalue is close to zero with lae = %f" % (lae, )
# normalize matrix by max ev
M /= lae
# scale normalized matrix to desired spectral radius
M *= g
# logger.debug('normalize_spectral_radius: M = %s, g = %s, lae = %s', M, g, lae)
# check for scaling
[w,v] = LA.eig(M)
lae = np.max(np.abs(w))
# print "normalize_spectral_radius: lae post/desired = %f / %f" % (lae, g)
assert np.abs(g - lae) < 0.1
################################################################################
# input matrix creation
def gauss(N):
beta = 0.5/sqrt(1.-(2.*arange(1,N))**(-2))
T = diag(beta, 1) + diag(beta, -1)
x, V = eig(T)
i = argsort(x)
x = x[i]
w = 2*V[0,i]**2
return x, w
def modularity(graph):
# convert to numpy adjacency matrix
A = nx.to_numpy_matrix(graph)
# compute adjacency matrix A's degree centrality
degree_centrality = np.sum(A, axis=0, dtype=int)
m = np.sum(degree_centrality, dtype=int) / 2
# compute matrix B
B = np.zeros(A.shape, dtype=float)
for i in range(len(A)):
for j in range(len(A)):
B[i, j] = A[i, j] - (degree_centrality[0, i] * degree_centrality[0, j]) / float(2 * m)
# compute A's eigenvector
w, v = LA.eig(B)
wmax = np.argmax(w)
s = np.zeros((len(A), 1), dtype=float)
for i in range(len(A)):
if v[i, wmax] < 0:
s[i, 0] = -1
else:
s[i, 0] = 1
Q = s.T.dot(B.dot(s)) / float(4 * m)
return Q[0, 0], s
test_linalg.py 文件源码
项目：PyDataLondon29-EmbarrassinglyParallelDAWithAWSLambda
作者: SignalMedia
项目源码
文件源码
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def do(self, a, b):
ev = linalg.eigvals(a)
evalues, evectors = linalg.eig(a)
assert_almost_equal(ev, evalues)
test_linalg.py 文件源码
项目：PyDataLondon29-EmbarrassinglyParallelDAWithAWSLambda
作者: SignalMedia
项目源码
文件源码
阅读 26
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def do(self, a, b):
evalues, evectors = linalg.eig(a)
assert_allclose(dot_generalized(a, evectors),
np.asarray(evectors) * np.asarray(evalues)[..., None, :],
rtol=get_rtol(evalues.dtype))
assert_(imply(isinstance(a, matrix), isinstance(evectors, matrix)))
