HpoOboParserTest.java 文件源码

@Test
public void testParseHpoHead() throws IOException {
  final HpoOboParser parser = new HpoOboParser(hpoHeadFile, true);
  final HpoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]]]}, edgeCount=4]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], altTermIds=[], name=All, definition=null, comment=Root of all terms in the Human Phenotype Ontology., subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], altTermIds=[], name=Phenotypic abnormality, definition=A phenotypic abnormality., comment=This is the root of the phenotypic abnormality subontology of the HPO., subsets=[], synonyms=[ImmutableTermSynonym [value=Organ abnormality, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1, relationQualifier=IS_A], 2=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2, relationQualifier=IS_A], 3=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3, relationQualifier=IS_A], 4=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-04-13, saved-by=Peter Robinson, Sebastian Koehler, Sandra Doelken, Chris Mungall, Melissa Haendel, Nicole Vasilevsky, Monarch Initiative, et al.}",
      ontology.getMetaInfo().toString());
}