GoOboParserTest.java 文件源码

@Test
public void testParseHpoHead() throws IOException {
  final GoOboParser parser = new GoOboParser(goHeadFile, true);
  final GoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]]]}, edgeCount=3]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005554], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0007582], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008372]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      startsWith("{ImmutableTermId"));
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      endsWith("createdBy=null, creationDate=null]}"));
  assertEquals(
      "{1=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1, relationQualifier=IS_A], 2=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2, relationQualifier=IS_A], 3=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-06-16, remark=Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/never_in_taxon.owl>))) [Axioms: 18 Logical Axioms: 0]}",
      ontology.getMetaInfo().toString());
}