MpoOboParserTest.java 文件源码

@Test
public void testParseHpoHead() throws IOException {
  final MpoOboParser parser = new MpoOboParser(mpoHeadFile, true);
  final MpoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3]]]}, edgeCount=3]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], altTermIds=[], name=mammalian phenotype, definition=the observable morphological, physiological, behavioral and other characteristics of mammalian organisms that are manifested through development and lifespan, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]], name=abnormal coat/hair pigmentation, definition=irregular or unusual pigmentation of the hair, comment=null, subsets=[Europhenome_Terms, IMPC, Sanger_Terms], synonyms=[ImmutableTermSynonym [value=abnormal coat color, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=abnormal hair pigmentation, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=coat: color anomalies, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=MGI:2173541, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], altTermIds=[], name=pigmentation phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], altTermIds=[], name=hyperpigmentation, definition=excess of pigment in any or all tissues or a part of a tissue, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]], name=abnormal coat/hair pigmentation, definition=irregular or unusual pigmentation of the hair, comment=null, subsets=[Europhenome_Terms, IMPC, Sanger_Terms], synonyms=[ImmutableTermSynonym [value=abnormal coat color, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=abnormal hair pigmentation, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=coat: color anomalies, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=MGI:2173541, description=null, trailingModifiers=null]]]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1, relationQualifier=IS_A], 2=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2, relationQualifier=IS_A], 3=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]",
      ontology.getRootTermId().toString());
  assertEquals("{data-version=releases/2017-06-05}", ontology.getMetaInfo().toString());
}