SequenceModificationPanel.java 文件源码

/**
 * Creates a new SequenceFragmentationPanel.
 *
 * @param aSequence String with the Modified Sequence of a peptide
 * identification.
 * @param profiles ArrayList with the modification profiles.
 * @param boolModifiedSequence boolean describing the sequence. This
 * constructor can be used to enter a ModifiedSequence or a normal sequence.
 * @param score1Name the name of the score above of the sequence
 * @param score2Name the name of the score under the sequence
 * @throws java.awt.HeadlessException if GraphicsEnvironment.isHeadless()
 * returns true.
 * @see java.awt.GraphicsEnvironment#isHeadless
 * @see javax.swing.JComponent#getDefaultLocale
 */
public SequenceModificationPanel(String aSequence, ArrayList<ModificationProfile> profiles, boolean boolModifiedSequence, String score1Name, String score2Name) throws HeadlessException {
    super();
    this.score1Name = score1Name;
    this.score2Name = score2Name;
    isModifiedSequence = boolModifiedSequence;
    iSequenceComponents = parseSequenceIntoComponents(aSequence);
    this.profiles = profiles;
    this.setPreferredSize(new Dimension(estimateWidth(), estimateHeight()));
    this.setMaximumSize(new Dimension(estimateWidth(), estimateHeight()));

    fragmentIonRectangles = new HashMap<String, Rectangle>();

    addMouseMotionListener(new MouseMotionAdapter() {

        public void mouseMoved(MouseEvent me) {
            mouseMovedHandler(me);
        }
    });
}