ttclust.py 文件源码

def generate_graphs(clusters_list, output, size, linkage, cutoff,distances):
    """
    DESCRIPTION
    Create a linear cluster mapping graph where every frame is printed as a
    colored barplot
    Args:
        clusters_labels (list): list of cluster number per frame
        output (string) output name for graph
    Return:
        colors_list (list) to be used with 2D distance projection graph
    """
    colors_list = plot_barplot(clusters_list, output, size)
    plot_dendro(linkage, output, cutoff, colors_list,clusters_list)
    plot_hist(clusters_list, output,colors_list)
    if (distances.shape[0] < 10000):
        implot(distances,output)
    else:
        printScreenLogfile("Too many frames! The RMSD distance matrix will not be generated")
    return colors_list