def getSlices(self,paths):
image,truth = paths
image = nib.load(image).get_data(); truth = nib.load(truth).get_data()
slicesWithValues = [unique(s) for s in where(truth>0)]
sliceAxis = argmin([len(s) for s in slicesWithValues])
slicesWithValues = slicesWithValues[sliceAxis]
slc = repeat(-1,3); slc[sliceAxis] = slicesWithValues[0]
if not self.padding is None:
image, truth = [padImage(im,self.padding) for im in (image[slc][0],truth[slc][0])]
else:
image, truth = (image[slc][0],truth[slc][0])
return (image,truth)
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