edam_to_galaxy.py 文件源码

def __init__(self, edam_url):
        """
        :param edam_url: path to EDAM.owl file
        :type edam_url: STRING

        All the EDAM ontology will be contained in a dictionnary (self.edam_ontology).
        """
        if edam_url is None:
            LOGGER.info("Loading EDAM info from http://edamontology.org/EDAM.owl")
            self.edam_ontology = rdflib.Graph()
            self.edam_ontology.parse("http://edamontology.org/EDAM.owl")
            # Get version of EDAM ontology
            version_query = """SELECT ?version WHERE {
                                     <http://edamontology.org> doap:Version ?version}"""
            for row in self.edam_ontology.query(version_query):
                self.version = row[0]
                break
        else:
            pass