def setUpClass(self):
self.DBURI = "postgresql+psycopg2://@:5432/dbimport"
if database_exists(self.DBURI):
drop_database(self.DBURI)
create_database(self.DBURI)
engine = create_engine(self.DBURI)
models.bind_engine(engine)
self.references = {"1": 249250621, "2": 243199373, "3": 198022430}
self.array = "test"
# referenceset, workspace, and individual registration previously
# tested
with dbimport.DBImport(self.DBURI).getSession() as session:
self.referenceset = session.registerReferenceSet(
str(uuid.uuid4()), "testAssembly", references=self.references)
self.workspace = session.registerWorkspace(
str(uuid.uuid4()), "/test/dbimport/workspace")
self.individual = session.registerIndividual(
str(uuid.uuid4()), name="testIndividual")
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