n2_videos_2.py 文件源码

python
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项目:CElegansBehaviour 作者: ChristophKirst 项目源码 文件源码
def image_filter(img):
  img2 = img.copy();
  img2[img2 < 30] = 100;
  img2 = exp.smooth_image(img2, sigma = 1.0);
  #plt.figure(6); plt.clf();
  #plt.imshow(img2);

  # threshold image and take zero smaller components..

  th = img2 < 92;

  th2 = morph.binary_closing(th, morph.diamond(1))

  label = meas.label(th2, background=0)
  #plt.imshow(mask)

  bs = meas.regionprops(label+1);
  area = np.array([prop.area for prop in bs]);
  if len(area) > 0:
    mask = np.logical_and(label > -1, label != np.argsort(area)[-1]);

    img2[mask] = 100;

  img2[:2,:] = 100; img2[-2:,:] = 100;
  img2[:,:2] = 100; img2[:,-2:] = 100;

  #plt.figure(6); plt.clf();
  #plt.subplot(1,2,1);
  #plt.imshow(img2, vmin = 84, vmax = 92, cmap = plt.cm.gray)
  #plt.subplot(1,2,2);
  #plt.imshow(img2);
  return img2;
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