data.py 文件源码

def __init__(self, options, genelist, transcriptlist):
        self.options = options
        # Openning tabix file representing the Ensembl database
        self.tabixfile = pysam.Tabixfile(options.args['ensembl'])
        self.proteinSeqs = dict()
        self.exonSeqs = dict()
        self.genelist = genelist
        self.transcriptlist = transcriptlist

    # Find transcripts overlapping with a variant