dbnsfp.old.py 文件源码

def __init__(self, vcffile=None):

        self.vcffile = vcffile

        self.filename = os.path.splitext(os.path.basename(str(vcffile)))[0]
        self.dbnfsp_reader = pysam.Tabixfile(settings.dbnsfp, encoding='utf-8')
        self.header = self.dbnfsp_reader.header.__next__().decode('utf8').strip().split('\t')

        # create folder snpeff if it doesn't exists
        if not os.path.exists('dbnfsp'):
            os.makedirs('dbnfsp')