test_bam.py 文件源码

def test_pad_softclip_1(tmpdir):
    "it should memorize the result"

    make_bam(tmpdir.strpath, """
        r1 + __.*.......
        r1 -   .*.......__
    """)

    o = Namespace(verbos=False, mismatch_limit=-1)
    sam = AlignmentFile(tmpdir.join("test.bam").strpath)

    a = pad_softclip(sam)
    b = pad_softclip(sam)

    assert a is b