mock_input_source.py 文件源码

def _read_input(self, in_file):
        """Dummy file of inputs

        :param in_file: path to input file of 2 cols (tab-delim); accession_number, sequence
        :type string
        :return dictionary of accession_number to sequence tags
        """
        result = {}
        with open(in_file, 'r') as f:
            reader = csv.DictReader(f, delimiter=str('\t'))
            for row in reader:
                result[row['accession']] = {
                    'transcript_sequence': row['transcript_sequence'],
                    'cds_start_i': int(row['cds_start_i']),
                    'cds_end_i': int(row['cds_end_i'])
                }

        return result