UI.py 文件源码

def _draw_plots(self, scaffolder):
        '''Setup all plots.'''
        self.contig_read_src = ColumnDataSource(dict(
            reads=[scaffolder.nrReads],
            contigs=[scaffolder.nrContigs],
            n50=[scaffolder.N50]))

        # Calculate data for contig circle plot
        circle = self._calculate_circle(scaffolder)
        self.contig_dist_src = ColumnDataSource(dict(
            start=circle[0],
            stop=circle[1],
            colors=circle[2],
            contigs=circle[3]))

        self.read_src = ColumnDataSource(dict(
            nrReads=[],
            nrPassReads=[],
            nrFailReads=[],
            readTime=[]))

        self.read_hist_src = ColumnDataSource(dict(
            readLength=[],
            left=[],
            right=[]))

        # Draw plots
        contigNrPlot = self._draw_contigNrPlot(scaffolder)
        n50Plot = self._draw_n50Plot()
        contigCirclePlot = self._draw_contigCirclePlot()
        readPlot = self._draw_readCountPlot()
        #readHist = self._draw_readLenHistPlot()

        # Position plots
        layout = gridplot([[n50Plot, contigNrPlot],
                          [contigCirclePlot, readPlot]])
        try:
            session = push_session(curdoc())
            session.show(layout)
        except IOError:
            sys.exit("No bokeh server is running on this host")