kraken_trawl.py 文件源码

def generate_log(dic_list):
    print("Generating a log of added genomes.", file = sys.stderr)
    fo = open("log", 'w')
    header = ['Organism', 'Accession', 'RefSeq', 'Assembly Level', 'Source', 'Destination']
    fo.write('\t'.join(header) + '\n')
    for assembly in dic_list:
        row = '\t'.join( [assembly['organism'], assembly['asm_name'], assembly['ref_status'], assembly['asm_level'],  assembly['source'], assembly['dest'] ]) + '\n'
        fo.write(row)
    fo.close()