trapes.py 文件源码

def writeSegDict(segDict, outF, chain):
    for seg in segDict:
        currDict = segDict[seg]
        pairs = ''
        for pair in currDict['pairs']:
            pairs += pair + '.'
        pairs = pairs[:-1]
        if currDict['len'] > 0:
            fLine = chain + '\t' + currDict['status'] + '\t'
            rank = findCurrRank(segDict, seg, currDict['len'])
            fLine += str(rank) + '\t'
            if currDict['type'] == 'V':
                fLine += currDict['name'] + '\t' + 'paired with: ' + pairs + '\t'
            else:
                fLine +=  'paired with: ' + pairs + '\t' + currDict['name'] + '\t'
            fLine += 'NA\t' + currDict['seq'] + '\tNA\tNA\tNA\t'
            fLine += 'NA\tNA\tNA\tNA\tNA\tNA\tNA\t'
            if currDict['type'] == 'V':
                fLine += seg + '\tNA\tNA\n'
            else:
                fLine += 'NA\t' + seg + '\tNA\n'
        #print fLine
            outF.write(str(fLine))