mmff_wooey.py 文件源码

def mmff_from_file(fasta_file, morphs):
    '''Compute a metamorphic tests files from an input FASTA file.
    Arguments:
       fasta_file: an open file object for the FASTA file
       morphs: list of morph functions to apply
    Result:
       tbc
    '''

    morphs_dict={
    'reverse':mmff_reverse,
    "passthrough": mmff_passthrough,
    'numeric_header': mmff_numeric_header
    }
    morphed_sequences= []

    for seq in SeqIO.parse(fasta_file, "fasta"):
        for morph in morphs:
            #print("morph "+str(morphs_dict[morph])+" on "+seq.id)
            morphed_sequences.append(morphs_dict[morph](seq))
    return morphed_sequences