render.py 文件源码

python
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项目:picasso 作者: jungmannlab 项目源码 文件源码
def substract_picks(self, path):
        oldpicks = self._picks.copy()
        with open(path, 'r') as f:
            regions = yaml.load(f)
            self._picks = regions['Centers']
            diameter = regions['Diameter']

            x_cord = np.array([_[0] for _ in self._picks])
            y_cord = np.array([_[1] for _ in self._picks])
            x_cord_old = np.array([_[0] for _ in oldpicks])
            y_cord_old = np.array([_[1] for _ in oldpicks])

            distances = np.sum((euclidean_distances(oldpicks, self._picks)<diameter/2)*1,axis=1)>=1
            filtered_list = [i for (i, v) in zip(oldpicks, distances) if not v]

            x_cord_new = np.array([_[0] for _ in filtered_list])
            y_cord_new = np.array([_[1] for _ in filtered_list])
            output = False

            if output:
                fig1 = plt.figure()
                plt.title('Old picks and new picks')
                plt.scatter(x_cord,-y_cord, c='r', label='Newpicks')
                plt.scatter(x_cord_old,-y_cord_old, c='b', label='Oldpicks')
                plt.scatter(x_cord_new,-y_cord_new, c='g', label='Picks to keep')
                fig1.show()
            self._picks = filtered_list

            self.update_pick_info_short()
            self.window.tools_settings_dialog.pick_diameter.setValue(regions['Diameter'])
            self.update_scene(picks_only=True)
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