def POST(self):
form = search_form()
form.validates()
error_message = ""
usr_in = form['term_id'].value
metasra_db = web.database(dbn='sqlite', db='static/metasra.sqlite')
#term_ancestors_db = web.database(dbn='sqlite', db='static/term_ancestors.sqlite')
term_ids = get_searched_term_ids(usr_in)
if len(term_ids) == 0:
error_message = "The query did not match the name nor synonym of any ontology terms. Please use the search-suggestion feature to guide your search."
request_results = []
for term_id in term_ids:
in_sample_type = form["sample_type"].value
if in_sample_type == "all":
results = query_metasra.query_metasra_for_term(metasra_db, term_id)
else:
results = query_metasra.query_metasra_for_term(metasra_db, term_id, sample_type=in_sample_type)
print "Preparing results..."
for r in results:
r_sample_acc = r["sample_accession"]
r_study_acc = r["study_accession"]
if r["study_title"]:
r_study_title = r["study_title"]
else:
r_study_title = ""
r_attrs_elem = r["sample_attributes_html"]
r_terms_elem = r["sample_terms_html"]
r_sample_name = r["sample_name"]
r_sample_type = r["sample_type"]
r_confidence = r["confidence"]
request_results.append([
'<a class="sample_accession_link" target="_blank" href="https://www.ncbi.nlm.nih.gov/biosample/%s">%s</a>' % (r_sample_acc,r_sample_acc),
'<a class="sample_accession_link" target="_blank" href="https://www.ncbi.nlm.nih.gov/biosample/%s">%s</a>' % (r_sample_acc,r_sample_name),
'<a class="study_link" target="_blank" href="https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=%s">%s</a>' % (r_study_acc, r_study_title),
'<div class="sample_type_table_entry">%s (%0.2f)</div>' % (r_sample_type, r_confidence),
r_terms_elem,
r_attrs_elem
])
print "Finished preparing results."
print "Returning %d results" % len(request_results)
return json.dumps({"error_message":error_message, "search_results":request_results})
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