conftest.py 文件源码

def atacseq_iface_without_resources():
    """
    Provide the ATAC-Seq pipeline interface as a fixture, without resources.

    Note that this represents the configuration data for the interface for a
    single pipeline. In order to use this in the form that a PipelineInterface
    expects, this needs to be the value to which a key is mapped within a
    larger Mapping.

    :return Mapping: all of the pipeline interface configuration data for
        ATAC-Seq, minus the resources section
    """
    return {
        "name": "ATACseq",
        "looper_args": True,
        "required_input_files": ["read1", "read2"],
        "all_input_files": ["read1", "read2"],
        "ngs_input_files": ["read1", "read2"],
        "arguments": {
            "--sample-name": "sample_name",
            "--genome": "genome",
            "--input": "read1",
            "--input2": "read2",
            "--single-or-paired": "read_type"
        },
        "optional_arguments": {
            "--frip-ref-peaks": "FRIP_ref",
            "--prealignments": "prealignments",
            "--genome-size": "macs_genome_size"
        }
    }