server.py 文件源码

python
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项目:IBRel 作者: lasigeBioTM 项目源码 文件源码
def main():
    starttime = time.time()
    #parser = argparse.ArgumentParser(description='')
    #parser.add_argument("action", choices=["start", "stop"])
    #parser.add_argument("--basemodel", dest="model", help="base model path")
    #parser.add_argument("-t", "--test", action="store_true",
    #                help="run a test instead of the server")
    #parser.add_argument("--log", action="store", dest="loglevel", default="WARNING", help="Log level")
    #options = parser.parse_args()
    numeric_level = getattr(logging, "DEBUG", None)
    #if not isinstance(numeric_level, int):
    #    raise ValueError('Invalid log level: %s' % options.loglevel)

    #while len(logging.root.handlers) > 0:
    #    logging.root.removeHandler(logging.root.handlers[-1])
    logging_format = '%(asctime)s %(levelname)s %(filename)s:%(lineno)s:%(funcName)s %(message)s'
    logging.basicConfig(level=numeric_level, format=logging_format)
    logging.getLogger().setLevel(numeric_level)

    logging.debug("Initializing the server...")
    server = IBENT(entities=[("mirtex_train_mirna_sner", "stanfordner", "mirna"),
                             ("chemdner_train_all", "stanfordner", "chemical"),
                             ("banner", "banner", "gene"),
                             ("genia_sample_gene", "stanfordner", "gene")],
                   relations=[("all_ddi_train_slk", "jsre", "ddi"),
                              ("mil_classifier4k", "smil", "mirna-gene")])
    logging.debug("done.")
    # Test server
    bottle.route("/ibent/status")(server.hello)

    # Fetch an existing document
    bottle.route("/ibent/<doctag>")(server.get_document)

    # Create a new document
    bottle.route("/ibent/<doctag>", method='POST')(server.new_document)

    # Get new entity annotations i.e. run a classifier again
    bottle.route("/ibent/entities/<doctag>/<annotator>", method='POST')(server.run_entity_annotator)

    # Get entity annotations i.e. fetch from the database
    bottle.route("/ibent/entities/<doctag>/<annotator>")(server.get_annotations)

    # Get new entity annotations i.e. run a classifier again
    bottle.route("/ibent/relations/<doctag>/<annotator>", method='POST')(server.run_relation_annotator)

    # Get new entity annotations i.e. run a classifier again
    bottle.route("/ibent/relations/<doctag>/<annotator>")(server.get_relations)

    # Get entity annotations i.e. fetch from the database
    #bottle.route("/ibent/entities/<doctag>/<annotator>")(server.get_annotations)

    #bottle.route("/iice/chemical/<text>/<modeltype>", method='POST')(server.process)
    #bottle.route("/ibent/interactions", method='POST')(server.get_relations)
    #daemon_run(host='10.10.4.63', port=8080, logfile="server.log", pidfile="server.pid")
    bottle.run(host=config.host_ip, port=8080, DEBUG=True)
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