_validation.py 文件源码

python
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项目:mriqc 作者: poldracklab 项目源码 文件源码
def permutation_test_score(estimator, X, y, groups=None, cv=None,
                           n_permutations=100, n_jobs=1, random_state=0,
                           verbose=0, scoring=None):
    """
    Evaluate the significance of a cross-validated score with permutations,
    as in test 1 of [Ojala2010]_.

    A modification of original sklearn's permutation test score function
    to evaluate p-value outside this function, so that the score can be
    reused from outside.


    .. [Ojala2010] Ojala and Garriga. Permutation Tests for Studying Classifier
                   Performance.  The Journal of Machine Learning Research (2010)
                   vol. 11

    """
    X, y, groups = indexable(X, y, groups)

    cv = check_cv(cv, y, classifier=is_classifier(estimator))
    scorer = check_scoring(estimator, scoring=scoring)
    random_state = check_random_state(random_state)

    # We clone the estimator to make sure that all the folds are
    # independent, and that it is pickle-able.
    permutation_scores = Parallel(n_jobs=n_jobs, verbose=verbose)(
        delayed(_permutation_test_score)(
            clone(estimator), X, _shuffle(y, groups, random_state),
            groups, cv, scorer)
        for _ in range(n_permutations))
    permutation_scores = np.array(permutation_scores)
    return permutation_scores
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