property_topomesh_optimization.py 文件源码

python
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项目:cellcomplex 作者: VirtualPlants 项目源码 文件源码
def property_topomesh_gaussian_smoothing_force(topomesh,gaussian_sigma=10.0):

    compute_topomesh_property(topomesh,'vertices',degree=1)
    edge_vertices = topomesh.wisp_property('vertices',degree=1).values()

    reversed_edge_vertices = np.transpose([edge_vertices[:,1],edge_vertices[:,0]])
    edge_vertices = np.append(edge_vertices,reversed_edge_vertices,axis=0)


    edge_vectors = topomesh.wisp_property('barycenter',degree=0).values(edge_vertices[:,1]) - topomesh.wisp_property('barycenter',degree=0).values(edge_vertices[:,0])
    edge_lengths = np.linalg.norm(edge_vectors,axis=1)
    gaussian_edge_lengths = np.exp(-np.power(edge_lengths,2.0)/np.power(gaussian_sigma,2.0))
    gaussian_edge_vectors = gaussian_edge_lengths[:,np.newaxis]*edge_vectors

    gaussian_force = np.transpose([nd.sum(gaussian_edge_vectors[:,d],edge_vertices[:,0],index=list(topomesh.wisps(0))) for d in [0,1,2]])
    vertices_weights = 1.+nd.sum(gaussian_edge_lengths,edge_vertices[:,0],index=list(topomesh.wisps(0)))
    gaussian_force = gaussian_force/vertices_weights[:,np.newaxis]

    return gaussian_force
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