matrix.py 文件源码

def report(self, summary_json_paths, barcode_summary_h5_path, recovered_cells, cell_bc_seqs):
        assert len(cell_bc_seqs) == len(self.matrices)

        barcode_summary_h5 = h5.File(barcode_summary_h5_path, 'r')

        d = {}

        d.update(self._report_genome_agnostic_metrics(
            summary_json_paths, barcode_summary_h5, recovered_cells, cell_bc_seqs))

        # Compute genome-specific metrics
        for i, (genome, matrix) in enumerate(self.matrices.iteritems()):
            for key, value in matrix.report(genome,
                                            barcode_summary_h5,
                                            recovered_cells,
                                            cell_bc_seqs=cell_bc_seqs[i],
                                        ).iteritems():
                key = '_'.join([genome, key])
                d[key] = value
        return d