tools.py 文件源码

def feat_eeg(signals):
    """
    calculate the relative power as defined by Leangkvist (2012),
    assuming signal is recorded with 100hz
    """
    if signals.ndim == 1: signals = np.expand_dims(signals,0)

    sfreq = use_sfreq
    nsamp = float(signals.shape[1])
    feats = np.zeros((signals.shape[0],9),dtype='float32')
    # 5 FEATURE for freq babnds
    w = (fft(signals,axis=1)).real
    delta = np.sum(np.abs(w[:,np.arange(0.5*nsamp/sfreq,4*nsamp/sfreq, dtype=int)]),axis=1)
    theta = np.sum(np.abs(w[:,np.arange(4*nsamp/sfreq,8*nsamp/sfreq, dtype=int)]),axis=1)
    alpha = np.sum(np.abs(w[:,np.arange(8*nsamp/sfreq,13*nsamp/sfreq, dtype=int)]),axis=1)
    beta  = np.sum(np.abs(w[:,np.arange(13*nsamp/sfreq,20*nsamp/sfreq, dtype=int)]),axis=1)
    gamma = np.sum(np.abs(w[:,np.arange(20*nsamp/sfreq,50*nsamp/sfreq, dtype=int)]),axis=1)   # only until 50, because hz=100
    spindle = np.sum(np.abs(w[:,np.arange(12*nsamp/sfreq,14*nsamp/sfreq, dtype=int)]),axis=1)
    sum_abs_pow = delta + theta + alpha + beta + gamma + spindle
    feats[:,0] = delta /sum_abs_pow
    feats[:,1] = theta /sum_abs_pow
    feats[:,2] = alpha /sum_abs_pow
    feats[:,3] = beta  /sum_abs_pow
    feats[:,4] = gamma /sum_abs_pow
    feats[:,5] = spindle /sum_abs_pow
    feats[:,6] = np.log10(stats.kurtosis(signals, fisher=False, axis=1))        # kurtosis
    feats[:,7] = np.log10(-np.sum([(x/nsamp)*(np.log(x/nsamp)) for x in np.apply_along_axis(lambda x: np.histogram(x, bins=8)[0], 1, signals)],axis=1))  # entropy.. yay, one line...
    #feats[:,7] = np.polynomial.polynomial.polyfit(np.log(f[np.arange(0.5*nsamp/sfreq,50*nsamp/sfreq, dtype=int)]), np.log(w[0,np.arange(0.5*nsamp/sfreq,50*nsamp/sfreq, dtype=int)]),1)
    feats[:,8] = np.dot(np.array([3.5,4,5,7,30]),feats[:,0:5].T ) / (sfreq/2-0.5)
    if np.any(feats==np.nan): print('NaN detected')
    return np.nan_to_num(feats)