ORFsClustering.py 文件源码

def clustering(self, clustering_distance):
        """
        Create clusters
        :param clustering_distance: max distance between ORFs in one clusters
        :return:
        """
        functions.log('Create clusters...')
        for ind, o in enumerate(scipy.cluster.hierarchy.fcluster(self.linkage_matrix, clustering_distance, 'distance')):
            if self.clusters.get(o) is None:
                self.clusters[o] = set()
            self.clusters[o].add(ind)
            self.orfs_clusters[ind] = o