ORFsClustering.py 文件源码

def start_clustering(self):
        functions.log('Calculate {0} distances...'.format(int(len(self.orfs) * (len(self.orfs) + 1) / 2)))
        self.distances = self.create_distance_matrix()
        functions.log('Start clustering...')
        self.linkage_matrix = scipy.cluster.hierarchy.linkage(ssd.squareform(self.distances), method='complete')
        functions.log('Clustering done.')