ProteinBot.py 文件源码

def run(self, records, total=None, fast_run=True, write=True):
        records = self.filter(records)
        for record in tqdm(records, mininterval=2, total=total):
            entrez_gene = str(record['entrezgene']['@value'])
            if entrez_gene not in self.gene_wdid_mapping:
                wdi_core.WDItemEngine.log("WARNING", format_msg(entrez_gene, "P351", None,
                                                                "Gene item not found during protein creation", None))
                continue
            gene_wdid = self.gene_wdid_mapping[entrez_gene]

            # handle multiple protiens
            if 'uniprot' in record and 'Swiss-Prot' in record['uniprot']['@value']:
                uniprots = record['uniprot']['@value']['Swiss-Prot']
                for uniprot in uniprots:
                    record['uniprot']['@value']['Swiss-Prot'] = uniprot
                    self.run_one(record, gene_wdid, write)
            else:
                self.run_one(record, gene_wdid, write)