GeneBot.py 文件源码

def cleanup(self, releases, last_updated):
        """

        :param releases:
        :param last_updated:
        :param failed: list of entrez ids to skip
        :return:
        """
        print(self.failed)
        entrez_qid = wdi_helpers.id_mapper('P351', ((PROPS['found in taxon'], self.organism_info['wdid']),))
        print(len(entrez_qid))
        entrez_qid = {entrez: qid for entrez, qid in entrez_qid.items() if entrez not in self.failed}
        print(len(entrez_qid))
        filter = {PROPS['Entrez Gene ID']: '', PROPS['found in taxon']: self.organism_info['wdid']}
        frc = FastRunContainer(wdi_core.WDBaseDataType, wdi_core.WDItemEngine, base_filter=filter, use_refs=True)
        frc.clear()
        for qid in tqdm(entrez_qid.values()):
            remove_deprecated_statements(qid, frc, releases, last_updated, list(PROPS.values()), self.login)