GeneBot.py 文件源码

def run(self, records, total=None, fast_run=True, write=True):
        # this shouldn't ever actually get used now
        raise ValueError()
        records = self.filter(records)
        for record in tqdm(records, mininterval=2, total=total):
            gene = self.GENE_CLASS(record, self.organism_info, self.login)
            try:
                gene.create_item(fast_run=fast_run, write=write)
            except Exception as e:
                exc_info = sys.exc_info()
                traceback.print_exception(*exc_info)
                msg = wdi_helpers.format_msg(gene.external_ids['Entrez Gene ID'], PROPS['Entrez Gene ID'], None,
                                             str(e), msg_type=type(e))
                wdi_core.WDItemEngine.log("ERROR", msg)
                gene.status = msg

            if gene.status is not True:
                self.failed.append(gene.entrez)