dna.py 文件源码

python
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项目:deepcpg 作者: cangermueller 项目源码 文件源码
def __call__(self, inputs):
        x = inputs[0]

        kernel_regularizer = kr.L1L2(l1=self.l1_decay, l2=self.l2_decay)
        x = kl.Conv1D(128, 11,
                      name='conv1',
                      kernel_initializer=self.init,
                      kernel_regularizer=kernel_regularizer)(x)
        x = kl.Activation('relu', name='act1')(x)
        x = kl.MaxPooling1D(2, name='pool1')(x)

        # 124
        x = self._res_unit(x, [32, 32, 128], stage=1, block=1, stride=2)
        x = self._res_unit(x, [32, 32, 128], atrous=2, stage=1, block=2)
        x = self._res_unit(x, [32, 32, 128], atrous=4, stage=1, block=3)

        # 64
        x = self._res_unit(x, [64, 64, 256], stage=2, block=1, stride=2)
        x = self._res_unit(x, [64, 64, 256], atrous=2, stage=2, block=2)
        x = self._res_unit(x, [64, 64, 256], atrous=4, stage=2, block=3)

        # 32
        x = self._res_unit(x, [128, 128, 512], stage=3, block=1, stride=2)
        x = self._res_unit(x, [128, 128, 512], atrous=2, stage=3, block=2)
        x = self._res_unit(x, [128, 128, 512], atrous=4, stage=3, block=3)

        # 16
        x = self._res_unit(x, [256, 256, 1024], stage=4, block=1, stride=2)

        x = kl.GlobalAveragePooling1D()(x)
        x = kl.Dropout(self.dropout)(x)

        return self._build(inputs, x)
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