classifiers.py 文件源码

python
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项目:microbiomeHD 作者: cduvallet 项目源码 文件源码
def results2df(results, dataset, n_ctrl, n_case, n_features):
    """
    Converts the results dictionary into tidy dataframe format.

    Parameters
    ----------
    results : dict
        results from cv_and_roc function
    dataset : str
        dataset ID
    n_ctrl, n_case, n_features : int
        number of controls, cases, and features

    Returns
    -------
    resultsdf : pandas DataFrame
        dataframe with 'mean_fpr', 'mean_tpr', 'fisher_p', and 'roc_auc' columns
        from the results dict, 'kappa' from
        cohen_kappa_score(results['y_preds']), and 'dataset', 'H_smpls',
        'dis_smpls', and 'num_features' from the input parameters
    """
    # Directly calling pd.DataFrame.from_dict doesn't work because
    # this dictionary contains arrays, matrices, etc..
    resultsdf = pd.DataFrame(data=np.array((results['mean_fpr'],
                                            results['mean_tpr'])).T,
                             columns=['mean_fpr', 'mean_tpr'])
    resultsdf['roc_auc'] = results['roc_auc']
    resultsdf['fisher_p'] = results['fisher_p']

    resultsdf['dataset'] = dataset
    resultsdf['H_smpls'] = n_ctrl
    resultsdf['dis_smpls'] = n_case
    resultsdf['num_features'] = n_features

    resultsdf['kappa'] = cohen_kappa_score(
        results['y_true'], results['y_preds'])

    return resultsdf
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