genotypeHLA.py 文件源码

def validate_locus(ctx,param,value):
    try:
        assert value in ["HLA-A","HLA-B", "HLA-C", "HLA-DPA1", "HLA-DPB1", "HLA-DQA1", "HLA-DQB1", "HLA-DRA", "HLA-DRB1", "HLA-DRB3", "HLA-DRB4", "HLA-DRB5", "HLA-DRB6", "HLA-DRB7", "HLA-DRB8", "HLA-DRB9"]
    except:
        raise click.BadParameter('Please define locus as HLA-A, HLA-B, HLA-DRB1 ... as you can find in awk -F[\*\ ] \'/^DE/ && /HLA/ {print $4}\' hla.dat|sort -u')
    return value