makeShorterClassII.py 文件源码

def validate_locus(ctx,param,value):
    try:
        assert value in ["HLA-DMA", "HLA-DMB", "HLA-DOA", "HLA-DOB", "HLA-DPA1", "HLA-DPB1", "HLA-DPB2", "HLA-DQA1", "HLA-DQB1", "HLA-DRA", "HLA-DRB1", "HLA-DRB2", "HLA-DRB3", "HLA-DRB4", "HLA-DRB5", "HLA-DRB6", "HLA-DRB7", "HLA-DRB8", "HLA-DRB9", "HLA-E", "HLA-F", "HLA-G", "HLA-H", "HLA-HFE", "HLA-J", "HLA-K", "HLA-L", "HLA-P", "HLA-V", "HLA-Y"]
    except:
        raise click.BadParameter('Please define locus as HLA-A, HLA-B, HLA-DRB1 ... as you can find in awk -F[\*\ ] \'/^DE/ && /HLA/ {print $4}\' hla.dat|sort -u')
    return value