test_mcmcmc.py 文件源码

python
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项目:RD-MCL 作者: biologyguy 项目源码 文件源码
def test_mcmcmc_check_convergence(hf):
    csv_path = os.path.join(hf.resource_path, "mcmcmc", "chain")
    chain1 = SimpleNamespace(step_counter=99, outfile=csv_path + "1.csv")
    chain2 = SimpleNamespace(step_counter=99, outfile=csv_path + "2.csv")
    chain3 = SimpleNamespace(step_counter=99, outfile=csv_path + "3.csv")

    mc_obj = SimpleNamespace(_check_convergence=mcmcmc.MCMCMC._check_convergence, chains=[chain1, chain2, chain3],
                             convergence=1.01)

    # Return False when step_counter < 100
    assert mc_obj._check_convergence(mc_obj) is False

    # Return False when convergence is not met
    chain1.step_counter = chain2.step_counter = chain3.step_counter = 100
    assert mc_obj._check_convergence(mc_obj) is False

    # Return True on convergence
    mc_obj.convergence = 1.1
    assert mc_obj._check_convergence(mc_obj) is True
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