frozen.py 文件源码

python
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项目:kripodb 作者: 3D-e-Chem 项目源码 文件源码
def _ingest_pairs(self, pairs, oid2nid, frame_size, limit, single_sided):
        oid2nid_v = np.vectorize(oid2nid.get)
        # whole pairs set does not fit in memory, so split it in frames with `frame_size` number of pairs.
        for start in range(0, limit, frame_size):
            stop = frame_size + start
            t1 = process_time()
            six.print_('Fetching pairs {0}:{1} of {2} ... '.format(start, stop, limit), end='', flush=True)
            raw_frame = pairs.read(start=start, stop=stop)
            t2 = process_time()
            six.print_('{0}s, Parsing ... '.format(int(t2 - t1)), flush=True)
            frame = self._translate_frame(raw_frame, oid2nid_v, single_sided)
            t3 = process_time()
            six.print_('Writing ... '.format(int(t3 - t2)), flush=True)
            # alternate direction, to make use of cached chunks of prev frame
            self._ingest_pairs_frame(frame)
            del frame
            t4 = process_time()
            six.print_('{0}s, Done with {1}:{2} in {3}s'.format(int(t4 - t3), start, stop, int(t4 - t1)), flush=True)
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