test_feature_conversion.py 文件源码

def test_genbank_record_fixing(self):
        with open(os.path.join(FILES_PATH, 'sample.gb')) as f:
            first_record = next(SeqIO.parse(f, 'genbank'))

        first_record.features = [unconvert_feature(convert_feature(f)) for f in first_record.features]

        output = StringIO()
        SeqIO.write(first_record, output, "genbank")
        with open(os.path.join(FILES_PATH, 'sample.fixed.gb')) as f:
            self.assertEqual(output.getvalue(), f.read())
        output.close()