interpret_templates.py 文件源码

def get_clinical_template(study):
    """Try to detect the clinical template file in the source dir and open it with pandas."""
    clinical_templates = [template for template in study.excel_files if "clin" in template.lower() and
                          "~$" not in template]

    clinical_template = None
    if len(clinical_templates) == 1:
        clinical_template_name = clinical_templates[0]
        clinical_template = pd.ExcelFile(clinical_template_name, comment="#")
        print("[INFO] Clinical data template detected: " + clinical_template_name)
    elif len(clinical_templates) == 0:
        study.clinical_template_present = False
        print("[WARNING] No clinical data template could be detected. Assuming only high-dimensional templates " +
              "are available.")
    else:
        print("[ERROR] Too many clinical data templates were found. " +
              "Make sure only one file has 'clinical' in its name.")
        Validity.list_length(clinical_templates, expected=1)

    return clinical_template