test_gene_overlap_barcharts.py 文件源码

def expected_result_find_overlaps():

    contents = u"""Chromosome  Start  End  Peak Region
0        chr1      3    5     0   gene
1        chr1      3    5     0    tss
2        chr1     12   14     1   gene
3        chr1    200  300     2   exon
4        chr1    200  300     2   exon
5        chr1    200  300     2   gene
6        chr1    200  300     2    tes
7        chr1    200  300     2    tss
8        chr1    240  297     3   exon
9        chr1    240  297     3   gene
10       chr1    240  297     3    tes"""

    return pd.read_table(StringIO(contents), header=0, sep="\s+")