test_tabulate.py 文件源码

def test_tabulate_skipped_sample_warning():
    """Test that a warning is provided if sequences in the FASTA file are not
    used because there is no corresponding sample in the metadata mapping"""
    seqf = open("./tests/data/sequences_extra_sample.fasta")
    metadata_mapping = read_metadata("./tests/data/metadata_mapping.txt",
                                     "time_points", "time_mask")
    with pytest.warns(UserWarning):
        seqcount = tabulate(seqf, metadata_mapping, False)
    seqf.close()