test_tool_contract.py 文件源码

def _check_unchunked_files(self, d):
        self.assertEqual(d['$chunk.ref_contigset_id'], self.INPUT_FILES[1])
        self.assertEqual(d['$chunk.ccsset_id'], self.INPUT_FILES[2])


#@unittest.skip("GMAP disabled")
#class TestScatterContigSetGMAP(ContigSetScatterBase,
#                               pbcommand.testkit.core.PbTestScatterApp):
#    DRIVER_BASE = "python -m pbtranscript.tasks.scatter_contigset_gmap"
#    INPUT_FILES = [  # identical to TestIcePartial inputs
#        op.join(MNT_DATA, "sa3", "nfl.contigset.xml"),
#        "/pbi/dept/secondary/siv/references/rat_UCSC/rat_UCSC.referenceset.xml",
#    ]
#
#    def _check_unchunked_files(self, d):
#        self.assertEqual(d['$chunk.reference_id'], self.INPUT_FILES[1])