3DChromatin_ReplicateQC.py 文件源码

def run_script(script_name,running_mode):
    subp.check_output(['bash','-c','chmod 755 '+script_name])
    if running_mode=='NA':
        output=subp.check_output(['bash','-c',script_name])
        if output!='':
            print output
    if running_mode=='write_script':
        pass
    if running_mode=='sge':
        memo='3G'
        output=subp.check_output(['bash','-c','qsub -l h_vmem='+memo+' -o '+script_name+'.o -e '+script_name+'.e '+script_name])
    #TODO: if you choose slurm, then you need to change the settings and provide a file with settings
    if running_mode=='slurm':
        memo='50G'
        partition='akundaje'
        output=subp.check_output(['bash','-c','sbatch --mem '+memo+' -o '+script_name+'.o -e '+script_name+'.e'+' -p '+partition+' '+script_name])