fast5_integrity_check.py 文件源码

def get_arguments():
    parser = argparse.ArgumentParser(description='FAST5 integrity check '
                                                 '(prints bad fast5 files to stdout)',
                                     formatter_class=argparse.ArgumentDefaultsHelpFormatter)
    parser.add_argument('dir', type=str,
                        help='directory of FAST5 reads to check (will be searched recursively)')
    args = parser.parse_args()
    args.dir = os.path.abspath(args.dir)
    return args