steep.py 文件源码

def build_parser():
    """Build argument parser."""

    parser = argparse.ArgumentParser(description=__doc__,
        formatter_class=argparse.ArgumentDefaultsHelpFormatter)

    # Required args
    parser.add_argument("--in_gct_path", "-i", required=True, help="path to input gct file")

    # Optional args
    parser.add_argument("--in_gct2_path", "-i2", help="path to second gct file")
    parser.add_argument("--out_name", "-o", default="steep_output.gct",
                        help="what to name the output similarity file")
    parser.add_argument("--similarity_metric", "-s", default="spearman",
                        choices=["spearman", "pearson"],
                        help="similarity metric to use for comparing columns")
    parser.add_argument("--verbose", "-v", action="store_true", default=False,
                        help="whether to increase the # of messages reported")

    return parser