prot_query.py 文件源码

def build_parser():
    """Build argument parser."""

    parser = argparse.ArgumentParser(description=__doc__,
                                     formatter_class=argparse.ArgumentDefaultsHelpFormatter)

    # Required args
    parser.add_argument("--user_input_yml", "-u", required=True,
                        help=".yml file with user-defined inputs")
    parser.add_argument("--out_dir", "-o", default=None,
                        help=("output directory that overrides " +
                              "what's provided in user_input_yml"))
    parser.add_argument("--psp_on_clue_yml", "-p", default=None,
                        help=("path to local YML file that overrides " +
                              "what's provided in user_input_yml"))
    parser.add_argument("--verbose", "-v", action="store_true", default=False,
                        help="whether to increase the # of messages reported")
    return parser