calc_qstats.py 文件源码

def generate_argparser():
    parser = argparse.ArgumentParser(
        description=__doc__,
        formatter_class=argparse.ArgumentDefaultsHelpFormatter,
        epilog=LICENSE)
    parser.add_argument('-d', '--data', type=os.path.abspath, nargs=1,
                        required=True,
                        help=("RESULT.node.score.csv file output from"
                              "quartet_sampling.py"))
    parser.add_argument("-c", "--clade", nargs=1,
                        help=("specify a clade using a comma-separated"
                              "list of 2+ descendant taxa"))
    parser.add_argument("-v", "--verbose", action="store_true",
                        help="verbose screen output")
    parser.add_argument("-s", "--startk", type=int, default=0,
                        help="starting branch numerical index")
    parser.add_argument("-p", "--stopk", type=int,
                        help="stopping branch numerical index")
    parser.add_argument("-o", "--out", type=os.path.abspath, nargs=1,
                        help="output file path for statistics")
    return parser