common.py 文件源码

python
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项目:cellranger 作者: 10XGenomics 项目源码 文件源码
def build_metrics_summary_csv(filename, sample_properties, sample_data, pipeline):
    metrics, alarms, charts, all_prefixes = get_constants_for_pipeline(pipeline)

    tables, _ = build_tables(sample_properties, metrics, alarms, sample_data, all_prefixes=all_prefixes)
    if not tables:
        sys.stderr.write("No metrics tables were generated, skipping CSV generation.\n")
        return

    csv_metrics = collections.OrderedDict()
    for table in tables:
    if not table:
        continue
        for metric, _, value in table['rows']:
            if type(metric) == dict:
                metric = metric['v']
            if type(value) == dict:
                value = value['v']
            if metric not in csv_metrics:
                csv_metrics[metric] = value

    with open(filename, 'wb') as f:
        writer = csv.writer(f)
        writer.writerow(csv_metrics.keys())
        writer.writerow(csv_metrics.values())
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